usefragsph not on
There are 9 ligand heavy atoms
Ligand center of coords (x y z): 35.3282222222222 23.9458888888889 8.61122222222222
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1186
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 975
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 961
Number of spheres polar: 408, nonpolar: 406, out of current total: 961
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 25.38646 45.10338 13.95846 33.68057 -1.37984 18.58100
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 456
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 410
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 373
Spheres center of coords (x y z): 35.2679180697051 24.3965274262734 9.94081780160859
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 7.7507122455099
Final number of output spheres is: 60
Number of polar spheres: 22
Number of nonpolar spheres: 31
Number of spheres that are near neither polar nor nonpolar receptor atoms: 7
Final number of spheres that are from crystallographic ligand: 9