usefragsph not on
There are 50 ligand heavy atoms
Ligand center of coords (x y z): 33.2632 23.66886 11.33744
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2057
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1294
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1293
Number of spheres polar: 383, nonpolar: 757, out of current total: 1293
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.33856 43.25174 13.72026 33.64078 1.33757 21.24998
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 610
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 513
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 493
Spheres center of coords (x y z): 34.8869756592293 24.9074132454361 10.4363062677485
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.76896695381031
Final number of output spheres is: 60
Number of polar spheres: 15
Number of nonpolar spheres: 41
Number of spheres that are near neither polar nor nonpolar receptor atoms: 4
Final number of spheres that are from crystallographic ligand: 50