usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 32.3679583333333 20.5800416666667 9.76479166666666 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1381 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1027 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1023 Number of spheres polar: 373, nonpolar: 502, out of current total: 1023 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.30846 42.22866 10.58643 30.53146 -0.12970 19.69667 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 470 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 401 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 385 Spheres center of coords (x y z): 34.1846225454546 23.76229 9.3735543116883 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.93093260823165 Final number of output spheres is: 60 Number of polar spheres: 39 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 24