usefragsph not on There are 9 ligand heavy atoms Ligand center of coords (x y z): 14.27 -11.5277777777778 -37.3583333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 976 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 779 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 775 Number of spheres polar: 343, nonpolar: 277, out of current total: 775 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.27055 24.20242 -21.08049 -1.53530 -47.25077 -27.50207 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 391 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 339 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 286 Spheres center of coords (x y z): 12.9304263636364 -12.8338024825175 -37.6505937412587 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.18784731154748 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 9