usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 34.0219444444444 22.0522777777778 10.1988888888889 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1423 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1056 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1056 Number of spheres polar: 445, nonpolar: 472, out of current total: 1056 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.70738 43.80230 12.07548 32.04636 0.27482 20.10215 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 479 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 408 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 369 Spheres center of coords (x y z): 35.2157090514905 24.4414692953929 10.4558769376694 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.98322285276441 Final number of output spheres is: 60 Number of polar spheres: 30 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 18