usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 32.3368571428571 21.4222857142857 10.5285238095238 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1453 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 940 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 940 Number of spheres polar: 364, nonpolar: 475, out of current total: 940 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.54985 42.33306 11.42420 31.40986 0.59651 20.48299 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 456 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 385 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 357 Spheres center of coords (x y z): 34.1037328011204 23.3220698879552 10.4086124369748 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.53794202149783 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 21