usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 30.1785555555556 22.1196111111111 10.6305555555556 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1598 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 889 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 884 Number of spheres polar: 358, nonpolar: 385, out of current total: 884 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 21.96458 40.17582 12.12999 32.05500 0.75974 20.29135 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 242 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 202 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 177 Spheres center of coords (x y z): 31.7376963841808 22.9316336158192 10.4297585310734 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.22921336910544 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 18