usefragsph not on
There are 50 ligand heavy atoms
Ligand center of coords (x y z): 33.08848 23.82674 10.75064
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2090
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1309
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1304
Number of spheres polar: 416, nonpolar: 676, out of current total: 1304
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.99219 43.08561 13.85590 33.82448 0.75394 20.68152
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 614
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 529
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 513
Spheres center of coords (x y z): 34.6116880896686 25.0918248148148 10.613714951267
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.12236625311607
Final number of output spheres is: 60
Number of polar spheres: 15
Number of nonpolar spheres: 38
Number of spheres that are near neither polar nor nonpolar receptor atoms: 7
Final number of spheres that are from crystallographic ligand: 50