usefragsph not on There are 50 ligand heavy atoms Ligand center of coords (x y z): 33.11974 23.50382 10.85026 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2171 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1261 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1260 Number of spheres polar: 425, nonpolar: 664, out of current total: 1260 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.05027 43.11634 13.52796 33.48920 0.89037 20.84792 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 567 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 489 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 474 Spheres center of coords (x y z): 34.9470717510548 25.0044197679325 10.1946926371308 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.06288131440109 Final number of output spheres is: 60 Number of polar spheres: 8 Number of nonpolar spheres: 46 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 50