usefragsph not on There are 50 ligand heavy atoms Ligand center of coords (x y z): 32.98688 22.96468 10.75812 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2130 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1348 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1348 Number of spheres polar: 438, nonpolar: 673, out of current total: 1348 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.89243 42.97264 13.38780 32.96021 0.77655 20.73418 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 657 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 577 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 562 Spheres center of coords (x y z): 34.6547168683274 24.3653096797153 10.2307538967972 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.03901898813634 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 41 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 50