usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 4.39738095238095 68.6325714285714 65.5042380952381 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1308 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 724 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 724 Number of spheres polar: 299, nonpolar: 368, out of current total: 724 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -5.57103 14.36941 59.05695 78.62590 55.53671 75.49784 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 187 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 154 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 127 Spheres center of coords (x y z): 2.23837811023622 66.0219362204724 67.7430326771653 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.5553332169433 Final number of output spheres is: 45 Number of polar spheres: 20 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 21