Distance from surface specified: 1.80 There are 21 ligand heavy atoms Ligand center of coords (x y z): 4.39738095238095 68.6325714285714 65.5042380952381 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 13546 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 11296 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 10687 Number of spheres polar: 7166, nonpolar: 2828, out of current total: 10687 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -9.59080 18.39580 54.94160 82.62420 54.44300 79.50300 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1043 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 527 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 489 Spheres center of coords (x y z): 0.744451533742331 70.6897558282209 71.8887177914111 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 12.8653361744792 Final number of output spheres is: 200 Number of polar spheres: 138 Number of nonpolar spheres: 58 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 21