There are 21 ligand heavy atoms Ligand center of coords (x y z): 4.39738095238095 68.6325714285714 65.5042380952381 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 13546 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 9221 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 9221 Number of spheres polar: 6390, nonpolar: 2237, out of current total: 9221 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -7.60200 15.25600 56.64780 80.62980 54.44300 77.49620 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 913 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 385 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 213 Spheres center of coords (x y z): 0.689854460093897 64.5545145539906 70.1529624413145 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 8.98006744116868 Final number of output spheres is: 120 Number of polar spheres: 73 Number of nonpolar spheres: 44 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 21