There are 19 ligand heavy atoms Ligand center of coords (x y z): 5.23036842105263 19.318947368421 37.4504210526316 useligsph not on Starting number of spheres from sph/sph cluster 0: 665 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 511 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 508 Number of spheres polar: 177, nonpolar: 238, out of current total: 508 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -6.76641 15.40662 7.37883 30.87966 26.09916 49.45013 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 152 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 125 No crystallographic spheres present, so determining sphere nearest center of ligand (x y z): 5.23036842105263 19.318947368421 37.4504210526316 Center point: 5 xyz: 5.16619 19.14955 37.99804 After continuity checking, number of spheres is: 93 Final number of output spheres is: 93 Number of polar spheres: 21 Number of nonpolar spheres: 44 Number of spheres that are near neither polar nor nonpolar receptor atoms: 28 Final number of spheres that are from crystallographic ligand: 0