usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 4.29821052631579 19.6183157894737 36.8568421052632 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 728 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 425 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 425 Number of spheres polar: 156, nonpolar: 208, out of current total: 425 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.74847 14.00008 9.62667 25.64875 26.90832 46.67726 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 131 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 102 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 95 Spheres center of coords (x y z): 5.54527157894736 16.1880201052632 39.2157501052632 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.48763332226716 Final number of output spheres is: 45 Number of polar spheres: 20 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 19