usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): -23.804 -14.4912631578947 8.04021052631579 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 628 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 407 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 407 Number of spheres polar: 142, nonpolar: 215, out of current total: 407 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -33.68200 -14.15230 -24.40850 -8.67467 -1.82102 17.30180 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 117 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 94 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 86 Spheres center of coords (x y z): -21.7366654651163 -18.5140891860465 10.243498255814 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.47708409315672 Final number of output spheres is: 45 Number of polar spheres: 20 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 19