usefragsph not on
There are 35 ligand heavy atoms
Ligand center of coords (x y z): 49.1588571428571 53.1148571428571 18.918
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1344
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 893
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 891
Number of spheres polar: 199, nonpolar: 584, out of current total: 891
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 39.25940 54.77177 43.20257 63.11247 9.00597 26.99110
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 446
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 386
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 376
Spheres center of coords (x y z): 47.1334880585107 53.151400930851 16.7804115159575
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.49826577611287
Final number of output spheres is: 60
Number of polar spheres: 12
Number of nonpolar spheres: 43
Number of spheres that are near neither polar nor nonpolar receptor atoms: 5
Final number of spheres that are from crystallographic ligand: 35