usefragsph not on
There are 33 ligand heavy atoms
Ligand center of coords (x y z): 49.6215454545455 53.586 19.0175454545455
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1366
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 909
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 908
Number of spheres polar: 241, nonpolar: 555, out of current total: 908
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 39.68466 55.88172 43.62845 63.56531 9.43378 28.98422
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 434
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 373
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 367
Spheres center of coords (x y z): 47.4847941144414 53.8398592098093 16.7748850408719
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.88378988562577
Final number of output spheres is: 60
Number of polar spheres: 16
Number of nonpolar spheres: 41
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 33