usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 60.7889090909091 66.7136363636364 47.1814090909091 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1011 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 743 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 743 Number of spheres polar: 135, nonpolar: 515, out of current total: 743 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 50.86686 70.70995 60.96544 76.65279 44.23400 57.12889 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 211 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 181 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 178 Spheres center of coords (x y z): 61.9473983707865 69.7056997191011 50.400394494382 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.98471384968187 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 22