usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 10.7586 15.6032 20.97025 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1164 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 714 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 714 Number of spheres polar: 142, nonpolar: 447, out of current total: 714 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 0.81966 15.44302 5.75237 25.47071 11.00858 30.22864 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 369 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 326 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 322 Spheres center of coords (x y z): 7.50738388198758 14.3676324534161 17.3203617391304 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.27329387609754 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 20