usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 50.2124166666667 55.9698333333333 20.03275 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1070 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 806 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 805 Number of spheres polar: 233, nonpolar: 464, out of current total: 805 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 40.30194 59.98117 45.99870 65.66206 10.27957 29.40611 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 247 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 190 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 185 Spheres center of coords (x y z): 47.5962811351351 54.8891733513514 17.0762806486486 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.96221143513425 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 24