usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 8.199 7.69209375 27.38821875 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1593 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 802 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 801 Number of spheres polar: 217, nonpolar: 399, out of current total: 801 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.80087 18.10144 -2.29762 17.66621 17.40241 37.24122 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 453 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 393 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 347 Spheres center of coords (x y z): 6.83607126801153 7.01186587896253 24.9423841498559 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.70627550447469 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 32