usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 0.255666666666667 59.6355 85.0196666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1518 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 796 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 796 Number of spheres polar: 238, nonpolar: 359, out of current total: 796 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -9.71208 10.22126 49.68356 69.03900 75.07680 94.78177 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 458 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 395 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 343 Spheres center of coords (x y z): -0.658198192419825 56.3864215451895 84.2904971137026 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.50932348247654 Final number of output spheres is: 60 Number of polar spheres: 33 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 18