usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 49.1223823529412 32.8435294117647 38.0336470588235 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1594 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 855 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 848 Number of spheres polar: 231, nonpolar: 348, out of current total: 848 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 39.14507 58.08649 22.88655 42.83083 28.04302 47.97756 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 329 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 283 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 269 Spheres center of coords (x y z): 48.6610293680297 32.1105453159851 35.8481410780669 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.29165228836035 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 13 Number of spheres that are near neither polar nor nonpolar receptor atoms: 18 Final number of spheres that are from crystallographic ligand: 34