usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 6.85566666666667 9.73252380952381 25.0174761904762 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1694 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 925 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 924 Number of spheres polar: 263, nonpolar: 423, out of current total: 924 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -3.11921 16.83933 -0.26733 19.68000 15.03810 32.61595 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 324 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 270 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 264 Spheres center of coords (x y z): 6.89331568181818 8.68186723484848 21.5428664393939 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.77694362569749 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 21