usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 18.5735625 13.655 -7.0410625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1890 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1007 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1005 Number of spheres polar: 218, nonpolar: 417, out of current total: 1005 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.58245 28.53728 3.70468 23.64866 -17.02261 2.94200 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 611 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 537 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 534 Spheres center of coords (x y z): 16.2121614606742 15.1721210486891 -7.49853325842698 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.13674074726942 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 32