usefragsph not on
There are 41 ligand heavy atoms
Ligand center of coords (x y z): 8.15917073170731 8.41121951219512 26.0654634146341
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1785
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 861
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 861
Number of spheres polar: 219, nonpolar: 478, out of current total: 861
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.79957 17.92906 -1.58816 18.36161 16.06600 35.95694
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 303
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 260
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 227
Spheres center of coords (x y z): 6.5714872246696 7.25898013215859 23.4939803524229
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.64863523390465
Final number of output spheres is: 45
Number of polar spheres: 11
Number of nonpolar spheres: 32
Number of spheres that are near neither polar nor nonpolar receptor atoms: 2
Final number of spheres that are from crystallographic ligand: 41