usefragsph not on
There are 20 ligand heavy atoms
Ligand center of coords (x y z): 44.14045 28.9284 2.5836
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1654
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 935
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 928
Number of spheres polar: 229, nonpolar: 445, out of current total: 928
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 34.21400 54.09382 18.93404 38.91296 -7.38738 12.53882
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 504
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 440
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 412
Spheres center of coords (x y z): 44.6777562378641 28.2568575 0.999898737864078
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.7839638903753
Final number of output spheres is: 60
Number of polar spheres: 14
Number of nonpolar spheres: 30
Number of spheres that are near neither polar nor nonpolar receptor atoms: 16
Final number of spheres that are from crystallographic ligand: 20