Distance from surface specified: 1.80 There are 20 ligand heavy atoms Ligand center of coords (x y z): 44.14045 28.9284 2.5836 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 13586 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 11146 WARNING: removing a crystallographic sphere that is distance 1.90107680013197 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 10992 Number of spheres polar: 6024, nonpolar: 3877, out of current total: 10992 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 30.14220 58.13960 14.95160 42.91560 -11.29440 16.54100 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1538 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 847 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 841 Spheres center of coords (x y z): 45.0430330558858 28.3824152199762 -0.0311797859690843 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 12.0216215996775 Final number of output spheres is: 200 Number of polar spheres: 137 Number of nonpolar spheres: 54 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 19