There are 21 ligand heavy atoms Ligand center of coords (x y z): 8.76380952380952 20.6243333333333 22.5917619047619 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 16155 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 9828 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 9828 Number of spheres polar: 5099, nonpolar: 4016, out of current total: 9828 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -3.23420 20.76300 8.63460 32.61960 10.59400 34.58100 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1139 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 469 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 346 Spheres center of coords (x y z): 4.70643063583815 22.2554190751445 22.3558208092485 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 8.84646709925589 Final number of output spheres is: 120 Number of polar spheres: 75 Number of nonpolar spheres: 42 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 21