usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): -25.7576818181818 -14.4760909090909 25.3639090909091 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1873 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 910 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 910 Number of spheres polar: 321, nonpolar: 491, out of current total: 910 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -35.71089 -16.41692 -24.46347 -4.48813 15.36711 35.32309 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 413 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 351 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 295 Spheres center of coords (x y z): -27.7178271186441 -16.4286384745763 28.6548543728814 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.56008791116206 Final number of output spheres is: 60 Number of polar spheres: 29 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 22