usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): -25.5580454545455 -14.5767727272727 25.9024090909091 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1834 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 832 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 832 Number of spheres polar: 246, nonpolar: 455, out of current total: 832 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -35.39733 -15.66327 -24.51640 -4.58077 16.68695 35.82431 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 400 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 348 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 319 Spheres center of coords (x y z): -26.9424294670846 -16.60949830721 28.7901311285267 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.4056319761531 Final number of output spheres is: 60 Number of polar spheres: 29 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 22