usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): -24.3283333333333 -14.1689259259259 26.291 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1678 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 868 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 868 Number of spheres polar: 279, nonpolar: 453, out of current total: 868 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -34.27065 -14.54122 -24.07641 -4.19755 16.31499 36.27952 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 226 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 183 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 149 Spheres center of coords (x y z): -27.0552765771812 -16.0514153020134 29.0263197986577 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.75630548982076 Final number of output spheres is: 45 Number of polar spheres: 21 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 27