usefragsph not on There are 15 ligand heavy atoms Ligand center of coords (x y z): -22.9244666666667 -12.9140666666667 25.3914666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1511 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 735 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 735 Number of spheres polar: 243, nonpolar: 419, out of current total: 735 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -32.92403 -13.00004 -22.88315 -3.08108 15.44518 35.35609 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 347 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 295 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 244 Spheres center of coords (x y z): -26.2892415163934 -15.0040525409836 28.1240908606557 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.43312164793432 Final number of output spheres is: 60 Number of polar spheres: 38 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 15