usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): -23.4545882352941 -13.4432352941176 25.58 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1441 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 682 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 682 Number of spheres polar: 193, nonpolar: 367, out of current total: 682 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -33.42262 -13.47602 -23.43615 -3.48554 15.58350 35.57706 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 203 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 169 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 140 Spheres center of coords (x y z): -26.4166028571429 -15.399811 28.4280647857143 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.14831483023906 Final number of output spheres is: 45 Number of polar spheres: 26 Number of nonpolar spheres: 16 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 17