usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 2.09171428571429 3.82542857142857 50.9267619047619 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1633 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 807 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 807 Number of spheres polar: 271, nonpolar: 459, out of current total: 807 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -7.43228 11.95649 -6.17203 13.79560 40.98584 60.91618 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 223 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 182 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 134 Spheres center of coords (x y z): 3.97376940298507 4.91021611940299 54.9663155223881 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.14605208086271 Final number of output spheres is: 45 Number of polar spheres: 23 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 21