usefragsph not on
There are 24 ligand heavy atoms
Ligand center of coords (x y z): 2.15833333333333 3.809875 51.8125416666667
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1941
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 959
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 959
Number of spheres polar: 343, nonpolar: 545, out of current total: 959
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -7.82750 11.71855 -6.11124 13.71105 41.87453 61.79900
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 468
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 399
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 326
Spheres center of coords (x y z): 2.66386245398773 5.33831598159509 56.1726796319019
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.34046312732955
Final number of output spheres is: 60
Number of polar spheres: 38
Number of nonpolar spheres: 19
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 24