usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 64.233962962963 17.1539259259259 12.4287407407407 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1577 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 850 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 850 Number of spheres polar: 268, nonpolar: 507, out of current total: 850 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 55.87223 74.21428 7.49670 27.09356 2.43177 22.36256 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 216 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 176 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 160 Spheres center of coords (x y z): 67.69799775 17.6329395 15.481905625 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.80845910732436 Final number of output spheres is: 45 Number of polar spheres: 25 Number of nonpolar spheres: 16 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 27