usefragsph not on There are 31 ligand heavy atoms Ligand center of coords (x y z): 15.7610322580645 8.72990322580645 8.72174193548387 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2276 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1045 WARNING: removing a crystallographic sphere that is distance 0.810784188301671 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1044 Number of spheres polar: 359, nonpolar: 604, out of current total: 1044 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.76576 25.75371 -1.22609 18.71243 -0.17777 18.71869 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 278 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 218 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 200 Spheres center of coords (x y z): 11.7939639 10.2900165 9.44183415 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.33806993690223 Final number of output spheres is: 45 Number of polar spheres: 25 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 30