usefragsph not on
There are 20 ligand heavy atoms
Ligand center of coords (x y z): 2.2488 4.68495 51.3982
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1611
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 839
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 839
Number of spheres polar: 264, nonpolar: 502, out of current total: 839
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -7.74941 12.21089 -5.30020 14.67482 41.40609 61.39111
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 242
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 204
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 160
Spheres center of coords (x y z): 3.1834405625 6.09818775 55.6056326875
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.53806929702826
Final number of output spheres is: 45
Number of polar spheres: 26
Number of nonpolar spheres: 18
Number of spheres that are near neither polar nor nonpolar receptor atoms: 1
Final number of spheres that are from crystallographic ligand: 20