usefragsph not on
There are 19 ligand heavy atoms
Ligand center of coords (x y z): 5.99026315789474 3.014 17.3448947368421
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1264
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 717
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 717
Number of spheres polar: 275, nonpolar: 324, out of current total: 717
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -3.98646 15.97098 -6.88099 12.55373 7.34747 27.27881
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 355
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 295
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 280
Spheres center of coords (x y z): 9.25719621428572 1.50688453571429 19.2867658571429
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.82767890659566
Final number of output spheres is: 60
Number of polar spheres: 30
Number of nonpolar spheres: 27
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 19