Distance from surface specified: 1.80 There are 19 ligand heavy atoms Ligand center of coords (x y z): 5.99026315789474 3.014 17.3448947368421 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 12053 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 10491 WARNING: removing a crystallographic sphere that is distance 1.98255945686378 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 10271 Number of spheres polar: 6695, nonpolar: 2543, out of current total: 10271 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -7.98740 19.98400 -9.45600 17.00820 3.36080 31.34380 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1174 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 537 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 430 Spheres center of coords (x y z): 7.50907441860465 2.91962279069767 18.2724423255814 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 11.4476442989412 Final number of output spheres is: 200 Number of polar spheres: 131 Number of nonpolar spheres: 52 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 18