usefragsph not on There are 31 ligand heavy atoms Ligand center of coords (x y z): 22.5083548387097 -18.8072903225806 8.45432258064516 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1831 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 936 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 936 Number of spheres polar: 282, nonpolar: 553, out of current total: 936 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 12.59870 32.43567 -28.78374 -8.82623 -1.48018 18.36876 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 262 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 219 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 201 Spheres center of coords (x y z): 21.211011641791 -23.1087108457711 8.00241905472637 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.1818389018525 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 31