Distance from surface specified: 1.80 There are 31 ligand heavy atoms Ligand center of coords (x y z): 22.5083548387097 -18.8072903225806 8.45432258064516 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 15822 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 11620 WARNING: removing a crystallographic sphere that is distance 1.8664463560467 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 11275 Number of spheres polar: 7202, nonpolar: 3149, out of current total: 11275 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.55400 36.50000 -32.80460 -4.80840 -5.53180 22.44480 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1435 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 616 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 570 Spheres center of coords (x y z): 22.5905070175439 -24.5206357894737 10.9487277192982 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 10.4817220035807 Final number of output spheres is: 200 Number of polar spheres: 131 Number of nonpolar spheres: 62 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 30