usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 19.4761578947368 24.5338947368421 62.7418947368421 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1006 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 561 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 561 Number of spheres polar: 156, nonpolar: 172, out of current total: 561 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.66791 29.46676 14.62831 34.48901 52.81527 72.72314 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 334 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 302 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 270 Spheres center of coords (x y z): 21.2138408888889 21.9473203703704 60.3897307777778 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.19190561556197 Final number of output spheres is: 60 Number of polar spheres: 5 Number of nonpolar spheres: 38 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 19