usefragsph not on There are 13 ligand heavy atoms Ligand center of coords (x y z): 17.3246923076923 25.5307692307692 62.4203076923077 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 772 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 437 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 433 Number of spheres polar: 119, nonpolar: 205, out of current total: 433 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.32791 27.29159 15.56207 35.45766 52.58543 72.15477 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 258 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 213 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 188 Spheres center of coords (x y z): 19.5361225 22.4448996276596 60.931045 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.93281712143185 Final number of output spheres is: 60 Number of polar spheres: 12 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 13