usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): -31.705 6.07265 -47.73025 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 799 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 482 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 479 Number of spheres polar: 142, nonpolar: 235, out of current total: 479 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -41.65400 -22.01205 -2.49962 15.55993 -57.70409 -37.76266 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 264 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 236 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 220 Spheres center of coords (x y z): -34.4891598181818 4.9009059090909 -49.9587138181818 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.33077472423701 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 20