usefragsph not on
There are 26 ligand heavy atoms
Ligand center of coords (x y z): -5.06961538461538 0.199423076923077 9.94957692307692
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1071
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 599
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 598
Number of spheres polar: 132, nonpolar: 313, out of current total: 598
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -15.00487 4.70757 -9.80009 10.18087 -0.00516 19.05059
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 310
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 267
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 227
Spheres center of coords (x y z): -8.5562059030837 -0.0485886784140967 10.8838933480176
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.17492070201128
Final number of output spheres is: 60
Number of polar spheres: 6
Number of nonpolar spheres: 47
Number of spheres that are near neither polar nor nonpolar receptor atoms: 7
Final number of spheres that are from crystallographic ligand: 26