Enabling DOCK Developer Scripts incl Database Preparation Intel/Linux inactives we got past inactivesDB.ism actives we got past actives.ism node-3-06.c.bkslab.org du2 starts 1 molecule processed, 0 errors convert.py (MDL SDF -> Isomeric SMILES): mols in: 1 mols out: 1 Total: 1 mols processed. mol2nam v1.9 Structure to Name Conversion OpenEye Scientific Software, February 2009 convert.py (Tripos MOL2 -> Isomeric SMILES): mols in: 1 mols out: 1 Total: 1 mols processed. mid: No such file or directory. hi: No such file or directory. lo: No such file or directory. mid: No such file or directory. first try already in then inzinc count is 0 bzcat: Can't open input file 92: No such file or directory. bzcat: Can't open input file 42: No such file or directory. convert.py (Tripos MOL2 -> MDL SDF): mols in: 1 mols out: 1 Total: 1 mols processed. count is 0 nothing to compress bzcat: Can't open input file 92: No such file or directory. bzcat: Can't open input file 42: No such file or directory. nothing to compress du2.csh script updated ligand processing MakeDOCK 2.0, modified by J.Irwin and M.Mysinger. Previous versions by D.M.Lorber, B.Q.Wei, A.N.Kirschner, and N.Huang Using scripts in /raid5/people/mysinger/xyz/dockenv. Creating binding-site residue list Creating molecular surface real 0m0.260s user 0m0.111s sys 0m0.028s Creating sphgen spheres Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 0:2916 spheres. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 17. 18. 18. 18. 18. 18. 18. 18. 18. 18. 18. 18. 18. 18. 18. 18. 18. 18. 18. 18. 18. 18. 18. 18. 18. 18. 18. 18. 18. 18. 18. 18. 18. 18. 18. 18. 18. 18. 18. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 19. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 41. 42. 42. 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Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 1: 29 spheres. 1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13. 14. 15. 16. 17. 18. 19. 20. 21. 22. 23. 24. 25. 26. 27. 28. 29.FORTRAN STOP Adding essential hydrogens to receptor Generating matching spheres for delphi Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 1: 120 spheres. 9001.9002.9003.9004.9005.9006.9007.9008.9009.9010.9011.9012.9013.9014.9015.9016.9017.9018.9019.9020.9021.9022.9023.9024.9025.9026.9027.9028.9029.9030.9031.9032.9033.9034.9035.9036.9037.9038.9039.9040.9041.9042.9043.9044.9045.9046.9047.9048.9049.9050.9051.9052.9053.9054.9055.9056.9057.9058.9059.9060.9061.9062.9063.9064.9065.9066.9067.9068.9069.9070.9071.9072.9073.9074.9075.9076.9077.9078.9079.9080.9081.9082.9083.9084.9085.9086.9087.9088.9089.9090.9091.9092.9093.9094.9095.9096.9097.9098.9099.9100.9101.9102.9103.9104.9105.9106.9107.9108.9109.9110.9111.9112.9113.9114.9115.9116.9117.9118.9119.9120.FORTRAN STOP Generating faster matching2 spheres for docking Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 1: 45 spheres. 9001.9002.9003.9004.9005.9006.9007.9008.9009.9010.9011.9012.9013.9014.9015.9016.9017.9018.9019.9020.9021.9022.9023.9024.9025.9026.9027.9028.9029.9030.9031.9032.9033.9034.9035.9036.9037.9038.9039.9040.9041.9042.9043.9044.9045.FORTRAN STOP Coloring matching spheres Generating slower matching3 spheres for docking Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 1: 60 spheres. 9001.9002.9003.9004.9005.9006.9007.9008.9009.9010.9011.9012.9013.9014.9015.9016.9017.9018.9019.9020.9021.9022.9023.9024.9025.9026.9027.9028.9029.9030.9031.9032.9033.9034.9035.9036.9037.9038.9039.9040.9041.9042.9043.9044.9045.9046.9047.9048.9049.9050.9051.9052.9053.9054.9055.9056.9057.9058.9059.9060.FORTRAN STOP Coloring matching spheres Adding spheres to electrostatic grid Creating DelPhi electrostatic grid real 0m41.164s user 0m38.601s sys 0m1.589s Adding spheres to tarted electrostatic grid Creating DelPhi electrostatic grid real 0m41.640s user 0m39.043s sys 0m1.621s Creating box around spheres Creating chemgrid maps real 0m13.199s user 0m12.335s sys 0m0.553s Atomic solvent excluded volume calculations underway FORTRAN STOP real 44m47.996s user 44m46.715s sys 0m0.237s Checking for WARNINGS in OUTPARM. Checking for WARNINGS in delphi.log. !!! WARNING: SER 2 has a net charge of 0.2920 !!! WARNING: ARG 3 has a net charge of 0.2370 !!! WARNING: LEU 4 has a net charge of 0.2040 !!! WARNING: LEU 5 has a net charge of 0.2040 !!! WARNING: LEU 6 has a net charge of 0.2040 !!! WARNING: ASN 7 has a net charge of 0.2170 !!! WARNING: ASN 8 has a net charge of 0.2170 !!! WARNING: ALA 10 has a net charge of 0.2150 !!! WARNING: LYS 11 has a net charge of 0.2270 !!! WARNING: MET 12 has a net charge of 0.1370 !!! WARNING: PRO 13 has a net charge of 0.1120 !!! WARNING: ILE 14 has a net charge of 0.1990 !!! WARNING: LEU 15 has a net charge of 0.2040 !!! WARNING: GLY 16 has a net charge of 0.2460 !!! WARNING: LEU 17 has a net charge of 0.2040 !!! WARNING: GLY 18 has a net charge of 0.2460 !!! WARNING: THR 19 has a net charge of 0.2680 !!! WARNING: TRP 20 has a net charge of 0.2480 !!! WARNING: LYS 21 has a net charge of 0.2270 !!! WARNING: SER 22 has a net charge of 0.2920 !!! WARNING: PRO 23 has a net charge of 0.1120 !!! WARNING: PRO 24 has a net charge of 0.1120 !!! WARNING: GLY 25 has a net charge of 0.2460 !!! WARNING: GLN 26 has a net charge of 0.2100 !!! WARNING: VAL 27 has a net charge of 0.2010 !!! WARNING: THR 28 has a net charge of 0.2680 !!! WARNING: GLU 29 has a net charge of 0.2460 !!! WARNING: ALA 30 has a net charge of 0.2150 !!! WARNING: VAL 31 has a net charge of 0.2010 !!! WARNING: LYS 32 has a net charge of 0.2270 !!! WARNING: VAL 33 has a net charge of 0.2010 !!! WARNING: ALA 34 has a net charge of 0.2150 !!! WARNING: ILE 35 has a net charge of 0.1990 !!! WARNING: VAL 37 has a net charge of 0.2010 !!! WARNING: GLY 38 has a net charge of 0.2460 !!! WARNING: TYR 39 has a net charge of 0.2450 !!! WARNING: ARG 40 has a net charge of 0.2370 !!! WARNING: ILE 42 has a net charge of 0.1990 !!! WARNING: ASP 43 has a net charge of 0.2460 !!! WARNING: CYS 44 has a net charge of 0.1460 !!! WARNING: ALA 45 has a net charge of 0.2150 !!! WARNING: VAL 47 has a net charge of 0.2010 !!! WARNING: TYR 48 has a net charge of 0.2450 !!! WARNING: GLN 49 has a net charge of 0.2100 !!! WARNING: ASN 50 has a net charge of 0.2170 !!! WARNING: GLU 51 has a net charge of 0.2460 !!! WARNING: ASN 52 has a net charge of 0.2170 !!! WARNING: GLU 53 has a net charge of 0.2460 !!! WARNING: VAL 54 has a net charge of 0.2010 !!! WARNING: GLY 55 has a net charge of 0.2460 !!! WARNING: VAL 56 has a net charge of 0.2010 !!! WARNING: ALA 57 has a net charge of 0.2150 !!! WARNING: ILE 58 has a net charge of 0.1990 !!! WARNING: GLN 59 has a net charge of 0.2100 !!! WARNING: GLU 60 has a net charge of 0.2460 !!! WARNING: ARG 69 has a net charge of 0.2370 !!! WARNING: GLU 70 has a net charge of 0.2460 !!! WARNING: GLU 71 has a net charge of 0.2460 !!! WARNING: LEU 72 has a net charge of 0.2040 !!! WARNING: PHE 73 has a net charge of 0.2140 !!! WARNING: ILE 74 has a net charge of 0.1990 !!! WARNING: VAL 75 has a net charge of 0.2010 !!! WARNING: SER 76 has a net charge of 0.2920 !!! WARNING: LYS 77 has a net charge of 0.2270 !!! WARNING: LEU 78 has a net charge of 0.2040 !!! WARNING: TRP 79 has a net charge of 0.2480 !!! WARNING: CYS 80 has a net charge of 0.1460 !!! WARNING: THR 81 has a net charge of 0.2680 !!! WARNING: TYR 82 has a net charge of 0.2450 !!! WARNING: GLU 84 has a net charge of 0.2460 !!! WARNING: LYS 85 has a net charge of 0.2270 !!! WARNING: GLY 86 has a net charge of 0.2460 !!! WARNING: LEU 87 has a net charge of 0.2040 !!! WARNING: VAL 88 has a net charge of 0.2010 !!! WARNING: LYS 89 has a net charge of 0.2270 !!! WARNING: GLY 90 has a net charge of 0.2460 !!! WARNING: ALA 91 has a net charge of 0.2150 !!! WARNING: CYS 92 has a net charge of 0.1460 !!! WARNING: GLN 93 has a net charge of 0.2100 !!! WARNING: LYS 94 has a net charge of 0.2270 !!! WARNING: THR 95 has a net charge of 0.2680 !!! WARNING: LEU 96 has a net charge of 0.2040 !!! WARNING: SER 97 has a net charge of 0.2920 !!! WARNING: ASP 98 has a net charge of 0.2460 !!! WARNING: LEU 99 has a net charge of 0.2040 !!! WARNING: LYS 100 has a net charge of 0.2270 !!! WARNING: LEU 101 has a net charge of 0.2040 !!! WARNING: ASP 102 has a net charge of 0.2460 !!! WARNING: TYR 103 has a net charge of 0.2450 !!! WARNING: LEU 104 has a net charge of 0.2040 !!! WARNING: ASP 105 has a net charge of 0.2460 !!! WARNING: LEU 106 has a net charge of 0.2040 !!! WARNING: TYR 107 has a net charge of 0.2450 !!! WARNING: LEU 108 has a net charge of 0.2040 !!! WARNING: ILE 109 has a net charge of 0.1990 !!! WARNING: TRP 111 has a net charge of 0.2480 !!! WARNING: PRO 112 has a net charge of 0.1120 !!! WARNING: THR 113 has a net charge of 0.2680 !!! WARNING: GLY 114 has a net charge of 0.2460 !!! WARNING: PHE 115 has a net charge of 0.2140 !!! WARNING: LYS 116 has a net charge of 0.2270 !!! WARNING: PRO 117 has a net charge of 0.1120 !!! WARNING: GLY 118 has a net charge of 0.2460 !!! WARNING: LYS 119 has a net charge of 0.2270 !!! WARNING: GLU 120 has a net charge of 0.2460 !!! WARNING: PHE 121 has a net charge of 0.2140 !!! WARNING: PHE 122 has a net charge of 0.2140 !!! WARNING: PRO 123 has a net charge of 0.1120 !!! WARNING: LEU 124 has a net charge of 0.2040 !!! WARNING: ASP 125 has a net charge of 0.2460 !!! WARNING: GLU 126 has a net charge of 0.2460 !!! WARNING: SER 127 has a net charge of 0.2920 !!! WARNING: GLY 128 has a net charge of 0.2460 !!! WARNING: ASN 129 has a net charge of 0.2170 !!! WARNING: VAL 130 has a net charge of 0.2010 !!! WARNING: VAL 131 has a net charge of 0.2010 !!! WARNING: PRO 132 has a net charge of 0.1120 !!! WARNING: SER 133 has a net charge of 0.2920 !!! WARNING: ASP 134 has a net charge of 0.2460 !!! WARNING: THR 135 has a net charge of 0.2680 !!! WARNING: ASN 136 has a net charge of 0.2170 !!! WARNING: ILE 137 has a net charge of 0.1990 !!! WARNING: LEU 138 has a net charge of 0.2040 !!! WARNING: ASP 139 has a net charge of 0.2460 !!! WARNING: THR 140 has a net charge of 0.2680 !!! WARNING: TRP 141 has a net charge of 0.2480 !!! WARNING: ALA 142 has a net charge of 0.2150 !!! WARNING: ALA 143 has a net charge of 0.2150 !!! WARNING: MET 144 has a net charge of 0.1370 !!! WARNING: GLU 145 has a net charge of 0.2460 !!! WARNING: GLU 146 has a net charge of 0.2460 !!! WARNING: LEU 147 has a net charge of 0.2040 !!! WARNING: VAL 148 has a net charge of 0.2010 !!! WARNING: GLY 151 has a net charge of 0.2460 !!! WARNING: LEU 152 has a net charge of 0.2040 !!! WARNING: VAL 153 has a net charge of 0.2010 !!! WARNING: LYS 154 has a net charge of 0.2270 !!! WARNING: ALA 155 has a net charge of 0.2150 !!! WARNING: ILE 156 has a net charge of 0.1990 !!! WARNING: GLY 157 has a net charge of 0.2460 !!! WARNING: ILE 158 has a net charge of 0.1990 !!! WARNING: SER 159 has a net charge of 0.2920 !!! WARNING: ASN 160 has a net charge of 0.2170 !!! WARNING: PHE 161 has a net charge of 0.2140 !!! WARNING: ASN 162 has a net charge of 0.2170 !!! WARNING: LEU 164 has a net charge of 0.2040 !!! WARNING: GLN 165 has a net charge of 0.2100 !!! WARNING: VAL 166 has a net charge of 0.2010 !!! WARNING: GLU 167 has a net charge of 0.2460 !!! WARNING: MET 168 has a net charge of 0.1370 !!! WARNING: ILE 169 has a net charge of 0.1990 !!! WARNING: LEU 170 has a net charge of 0.2040 !!! WARNING: ASN 171 has a net charge of 0.2170 !!! WARNING: LYS 172 has a net charge of 0.2270 !!! WARNING: PRO 173 has a net charge of 0.1120 !!! WARNING: LEU 175 has a net charge of 0.2040 !!! WARNING: LYS 176 has a net charge of 0.2270 !!! WARNING: TYR 177 has a net charge of 0.2450 !!! WARNING: LYS 178 has a net charge of 0.2270 !!! WARNING: PRO 179 has a net charge of 0.1120 !!! WARNING: ALA 180 has a net charge of 0.2150 !!! WARNING: VAL 181 has a net charge of 0.2010 !!! WARNING: ASN 182 has a net charge of 0.2170 !!! WARNING: GLN 183 has a net charge of 0.2100 !!! WARNING: ILE 184 has a net charge of 0.1990 !!! WARNING: GLU 185 has a net charge of 0.2460 !!! WARNING: CYS 186 has a net charge of 0.1460 !!! WARNING: PRO 188 has a net charge of 0.1120 !!! WARNING: TYR 189 has a net charge of 0.2450 !!! WARNING: LEU 190 has a net charge of 0.2040 !!! WARNING: THR 191 has a net charge of 0.2680 !!! WARNING: GLN 192 has a net charge of 0.2100 !!! WARNING: GLU 193 has a net charge of 0.2460 !!! WARNING: LYS 194 has a net charge of 0.2270 !!! WARNING: LEU 195 has a net charge of 0.2040 !!! WARNING: ILE 196 has a net charge of 0.1990 !!! WARNING: GLN 197 has a net charge of 0.2100 !!! WARNING: TYR 198 has a net charge of 0.2450 !!! WARNING: CYS 199 has a net charge of 0.1460 !!! WARNING: GLN 200 has a net charge of 0.2100 !!! WARNING: SER 201 has a net charge of 0.2920 !!! WARNING: LYS 202 has a net charge of 0.2270 !!! WARNING: GLY 203 has a net charge of 0.2460 !!! WARNING: ILE 204 has a net charge of 0.1990 !!! WARNING: VAL 205 has a net charge of 0.2010 !!! WARNING: VAL 206 has a net charge of 0.2010 !!! WARNING: THR 207 has a net charge of 0.2680 !!! WARNING: ALA 208 has a net charge of 0.2150 !!! WARNING: TYR 209 has a net charge of 0.2450 !!! WARNING: SER 210 has a net charge of 0.2920 !!! WARNING: PRO 211 has a net charge of 0.1120 !!! WARNING: LEU 212 has a net charge of 0.2040 !!! WARNING: GLY 213 has a net charge of 0.2460 !!! WARNING: SER 214 has a net charge of 0.2920 !!! WARNING: PRO 215 has a net charge of 0.1120 !!! WARNING: ASP 216 has a net charge of 0.2460 !!! WARNING: ARG 217 has a net charge of 0.2370 !!! WARNING: PRO 218 has a net charge of 0.1120 !!! WARNING: TRP 219 has a net charge of 0.2480 !!! WARNING: ALA 220 has a net charge of 0.2150 !!! WARNING: LYS 221 has a net charge of 0.2270 !!! WARNING: PRO 222 has a net charge of 0.1120 !!! WARNING: GLU 223 has a net charge of 0.2460 !!! WARNING: ASP 224 has a net charge of 0.2460 !!! WARNING: PRO 225 has a net charge of 0.1120 !!! WARNING: SER 226 has a net charge of 0.2920 !!! WARNING: LEU 227 has a net charge of 0.2040 !!! WARNING: LEU 228 has a net charge of 0.2040 !!! WARNING: GLU 229 has a net charge of 0.2460 !!! WARNING: ASP 230 has a net charge of 0.2460 !!! WARNING: ILE 233 has a net charge of 0.1990 !!! WARNING: THR 243 has a net charge of 0.2680 !!! WARNING: THR 244 has a net charge of 0.2680 !!! WARNING: ALA 245 has a net charge of 0.2150 !!! WARNING: GLN 246 has a net charge of 0.2100 !!! WARNING: VAL 247 has a net charge of 0.2010 !!! WARNING: LEU 248 has a net charge of 0.2040 !!! WARNING: ILE 249 has a net charge of 0.1990 !!! WARNING: ARG 250 has a net charge of 0.2370 !!! WARNING: PHE 251 has a net charge of 0.2140 !!! WARNING: PRO 252 has a net charge of 0.1120 !!! WARNING: MET 253 has a net charge of 0.1370 !!! WARNING: GLN 254 has a net charge of 0.2100 !!! WARNING: ARG 255 has a net charge of 0.2370 !!! WARNING: ASN 256 has a net charge of 0.2170 !!! WARNING: LEU 257 has a net charge of 0.2040 !!! WARNING: VAL 258 has a net charge of 0.2010 !!! WARNING: VAL 259 has a net charge of 0.2010 !!! WARNING: ILE 260 has a net charge of 0.1990 !!! WARNING: PRO 261 has a net charge of 0.1120 !!! WARNING: LYS 262 has a net charge of 0.2270 !!! WARNING: SER 263 has a net charge of 0.2920 !!! WARNING: VAL 264 has a net charge of 0.2010 !!! WARNING: THR 265 has a net charge of 0.2680 !!! WARNING: PRO 266 has a net charge of 0.1120 !!! WARNING: GLU 267 has a net charge of 0.2460 !!! WARNING: ARG 268 has a net charge of 0.2370 !!! WARNING: ILE 269 has a net charge of 0.1990 !!! WARNING: ALA 270 has a net charge of 0.2150 !!! WARNING: GLU 271 has a net charge of 0.2460 !!! WARNING: ASN 272 has a net charge of 0.2170 !!! WARNING: PHE 273 has a net charge of 0.2140 !!! WARNING: LYS 274 has a net charge of 0.2270 !!! WARNING: VAL 275 has a net charge of 0.2010 !!! WARNING: LEU 288 has a net charge of 0.2040 !!! WARNING: LEU 289 has a net charge of 0.2040 !!! WARNING: SER 290 has a net charge of 0.2920 !!! WARNING: TYR 291 has a net charge of 0.2450 !!! WARNING: ASN 292 has a net charge of 0.2170 !!! WARNING: ARG 293 has a net charge of 0.2370 !!! WARNING: ASN 294 has a net charge of 0.2170 !!! WARNING: TRP 295 has a net charge of 0.2480 !!! WARNING: ARG 296 has a net charge of 0.2370 !!! WARNING: VAL 297 has a net charge of 0.2010 !!! WARNING: CYS 298 has a net charge of 0.1460 !!! WARNING: ALA 299 has a net charge of 0.2150 !!! WARNING: LEU 300 has a net charge of 0.2040 !!! WARNING: LEU 301 has a net charge of 0.2040 !!! WARNING: SER 302 has a net charge of 0.2920 !!! WARNING: CYS 303 has a net charge of 0.1460 !!! WARNING: THR 304 has a net charge of 0.2680 !!! WARNING: SER 305 has a net charge of 0.2920 !!! WARNING: LYS 307 has a net charge of 0.2270 !!! WARNING: ASP 308 has a net charge of 0.2460 !!! WARNING: TYR 309 has a net charge of 0.2450 !!! WARNING: PRO 310 has a net charge of 0.1120 !!! WARNING: PHE 311 has a net charge of 0.2140 !!! WARNING: GLU 313 has a net charge of 0.2460 !!! WARNING: GLU 314 has a net charge of 0.2460 !!! WARNING: PHE 315 has a net charge of 0.2140 !!! WARNING: NAP 350 has a net charge of -2.0000 !!! WARNING: SER 2 has a net charge of 0.2920 !!! WARNING: ARG 3 has a net charge of 0.2370 !!! WARNING: LEU 4 has a net charge of 0.2040 !!! WARNING: LEU 5 has a net charge of 0.2040 !!! WARNING: LEU 6 has a net charge of 0.2040 !!! WARNING: ASN 7 has a net charge of 0.2170 !!! WARNING: ASN 8 has a net charge of 0.2170 !!! WARNING: ALA 10 has a net charge of 0.2150 !!! WARNING: LYS 11 has a net charge of 0.2270 !!! WARNING: MET 12 has a net charge of 0.1370 !!! WARNING: PRO 13 has a net charge of 0.1120 !!! WARNING: ILE 14 has a net charge of 0.1990 !!! WARNING: LEU 15 has a net charge of 0.2040 !!! WARNING: GLY 16 has a net charge of 0.2460 !!! WARNING: LEU 17 has a net charge of 0.2040 !!! WARNING: GLY 18 has a net charge of 0.2460 !!! WARNING: THR 19 has a net charge of 0.2680 !!! WARNING: TRP 20 has a net charge of 0.2480 !!! WARNING: LYS 21 has a net charge of 0.2270 !!! WARNING: SER 22 has a net charge of 0.2920 !!! WARNING: PRO 23 has a net charge of 0.1120 !!! WARNING: PRO 24 has a net charge of 0.1120 !!! WARNING: GLY 25 has a net charge of 0.2460 !!! WARNING: GLN 26 has a net charge of 0.2100 !!! WARNING: VAL 27 has a net charge of 0.2010 !!! WARNING: THR 28 has a net charge of 0.2680 !!! WARNING: GLU 29 has a net charge of 0.2460 !!! WARNING: ALA 30 has a net charge of 0.2150 !!! WARNING: VAL 31 has a net charge of 0.2010 !!! WARNING: LYS 32 has a net charge of 0.2270 !!! WARNING: VAL 33 has a net charge of 0.2010 !!! WARNING: ALA 34 has a net charge of 0.2150 !!! WARNING: ILE 35 has a net charge of 0.1990 !!! WARNING: VAL 37 has a net charge of 0.2010 !!! WARNING: GLY 38 has a net charge of 0.2460 !!! WARNING: TYR 39 has a net charge of 0.2450 !!! WARNING: ARG 40 has a net charge of 0.2370 !!! WARNING: ILE 42 has a net charge of 0.1990 !!! WARNING: ASP 43 has a net charge of 0.2460 !!! WARNING: CYS 44 has a net charge of 0.1460 !!! WARNING: ALA 45 has a net charge of 0.2150 !!! WARNING: VAL 47 has a net charge of 0.2010 !!! WARNING: TYR 48 has a net charge of 0.2450 !!! WARNING: GLN 49 has a net charge of 0.2100 !!! WARNING: ASN 50 has a net charge of 0.2170 !!! WARNING: GLU 51 has a net charge of 0.2460 !!! WARNING: ASN 52 has a net charge of 0.2170 !!! WARNING: GLU 53 has a net charge of 0.2460 !!! WARNING: VAL 54 has a net charge of 0.2010 !!! WARNING: GLY 55 has a net charge of 0.2460 !!! WARNING: VAL 56 has a net charge of 0.2010 !!! WARNING: ALA 57 has a net charge of 0.2150 !!! WARNING: ILE 58 has a net charge of 0.1990 !!! WARNING: GLN 59 has a net charge of 0.2100 !!! WARNING: GLU 60 has a net charge of 0.2460 !!! WARNING: ARG 69 has a net charge of 0.2370 !!! WARNING: GLU 70 has a net charge of 0.2460 !!! WARNING: GLU 71 has a net charge of 0.2460 !!! WARNING: LEU 72 has a net charge of 0.2040 !!! WARNING: PHE 73 has a net charge of 0.2140 !!! WARNING: ILE 74 has a net charge of 0.1990 !!! WARNING: VAL 75 has a net charge of 0.2010 !!! WARNING: SER 76 has a net charge of 0.2920 !!! WARNING: LYS 77 has a net charge of 0.2270 !!! WARNING: LEU 78 has a net charge of 0.2040 !!! WARNING: TRP 79 has a net charge of 0.2480 !!! WARNING: CYS 80 has a net charge of 0.1460 !!! WARNING: THR 81 has a net charge of 0.2680 !!! WARNING: TYR 82 has a net charge of 0.2450 !!! WARNING: GLU 84 has a net charge of 0.2460 !!! WARNING: LYS 85 has a net charge of 0.2270 !!! WARNING: GLY 86 has a net charge of 0.2460 !!! WARNING: LEU 87 has a net charge of 0.2040 !!! WARNING: VAL 88 has a net charge of 0.2010 !!! WARNING: LYS 89 has a net charge of 0.2270 !!! WARNING: GLY 90 has a net charge of 0.2460 !!! WARNING: ALA 91 has a net charge of 0.2150 !!! WARNING: CYS 92 has a net charge of 0.1460 !!! WARNING: GLN 93 has a net charge of 0.2100 !!! WARNING: LYS 94 has a net charge of 0.2270 !!! WARNING: THR 95 has a net charge of 0.2680 !!! WARNING: LEU 96 has a net charge of 0.2040 !!! WARNING: SER 97 has a net charge of 0.2920 !!! WARNING: ASP 98 has a net charge of 0.2460 !!! WARNING: LEU 99 has a net charge of 0.2040 !!! WARNING: LYS 100 has a net charge of 0.2270 !!! WARNING: LEU 101 has a net charge of 0.2040 !!! WARNING: ASP 102 has a net charge of 0.2460 !!! WARNING: TYR 103 has a net charge of 0.2450 !!! WARNING: LEU 104 has a net charge of 0.2040 !!! WARNING: ASP 105 has a net charge of 0.2460 !!! WARNING: LEU 106 has a net charge of 0.2040 !!! WARNING: TYR 107 has a net charge of 0.2450 !!! WARNING: LEU 108 has a net charge of 0.2040 !!! WARNING: ILE 109 has a net charge of 0.1990 !!! WARNING: TRP 111 has a net charge of 0.2480 !!! WARNING: PRO 112 has a net charge of 0.1120 !!! WARNING: THR 113 has a net charge of 0.2680 !!! WARNING: GLY 114 has a net charge of 0.2460 !!! WARNING: PHE 115 has a net charge of 0.2140 !!! WARNING: LYS 116 has a net charge of 0.2270 !!! WARNING: PRO 117 has a net charge of 0.1120 !!! WARNING: GLY 118 has a net charge of 0.2460 !!! WARNING: LYS 119 has a net charge of 0.2270 !!! WARNING: GLU 120 has a net charge of 0.2460 !!! WARNING: PHE 121 has a net charge of 0.2140 !!! WARNING: PHE 122 has a net charge of 0.2140 !!! WARNING: PRO 123 has a net charge of 0.1120 !!! WARNING: LEU 124 has a net charge of 0.2040 !!! WARNING: ASP 125 has a net charge of 0.2460 !!! WARNING: GLU 126 has a net charge of 0.2460 !!! WARNING: SER 127 has a net charge of 0.2920 !!! WARNING: GLY 128 has a net charge of 0.2460 !!! WARNING: ASN 129 has a net charge of 0.2170 !!! WARNING: VAL 130 has a net charge of 0.2010 !!! WARNING: VAL 131 has a net charge of 0.2010 !!! WARNING: PRO 132 has a net charge of 0.1120 !!! WARNING: SER 133 has a net charge of 0.2920 !!! WARNING: ASP 134 has a net charge of 0.2460 !!! WARNING: THR 135 has a net charge of 0.2680 !!! WARNING: ASN 136 has a net charge of 0.2170 !!! WARNING: ILE 137 has a net charge of 0.1990 !!! WARNING: LEU 138 has a net charge of 0.2040 !!! WARNING: ASP 139 has a net charge of 0.2460 !!! WARNING: THR 140 has a net charge of 0.2680 !!! WARNING: TRP 141 has a net charge of 0.2480 !!! WARNING: ALA 142 has a net charge of 0.2150 !!! WARNING: ALA 143 has a net charge of 0.2150 !!! WARNING: MET 144 has a net charge of 0.1370 !!! WARNING: GLU 145 has a net charge of 0.2460 !!! WARNING: GLU 146 has a net charge of 0.2460 !!! WARNING: LEU 147 has a net charge of 0.2040 !!! WARNING: VAL 148 has a net charge of 0.2010 !!! WARNING: GLY 151 has a net charge of 0.2460 !!! WARNING: LEU 152 has a net charge of 0.2040 !!! WARNING: VAL 153 has a net charge of 0.2010 !!! WARNING: LYS 154 has a net charge of 0.2270 !!! WARNING: ALA 155 has a net charge of 0.2150 !!! WARNING: ILE 156 has a net charge of 0.1990 !!! WARNING: GLY 157 has a net charge of 0.2460 !!! WARNING: ILE 158 has a net charge of 0.1990 !!! WARNING: SER 159 has a net charge of 0.2920 !!! WARNING: ASN 160 has a net charge of 0.2170 !!! WARNING: PHE 161 has a net charge of 0.2140 !!! WARNING: ASN 162 has a net charge of 0.2170 !!! WARNING: LEU 164 has a net charge of 0.2040 !!! WARNING: GLN 165 has a net charge of 0.2100 !!! WARNING: VAL 166 has a net charge of 0.2010 !!! WARNING: GLU 167 has a net charge of 0.2460 !!! WARNING: MET 168 has a net charge of 0.1370 !!! WARNING: ILE 169 has a net charge of 0.1990 !!! WARNING: LEU 170 has a net charge of 0.2040 !!! WARNING: ASN 171 has a net charge of 0.2170 !!! WARNING: LYS 172 has a net charge of 0.2270 !!! WARNING: PRO 173 has a net charge of 0.1120 !!! WARNING: LEU 175 has a net charge of 0.2040 !!! WARNING: LYS 176 has a net charge of 0.2270 !!! WARNING: TYR 177 has a net charge of 0.2450 !!! WARNING: LYS 178 has a net charge of 0.2270 !!! WARNING: PRO 179 has a net charge of 0.1120 !!! WARNING: ALA 180 has a net charge of 0.2150 !!! WARNING: VAL 181 has a net charge of 0.2010 !!! WARNING: ASN 182 has a net charge of 0.2170 !!! WARNING: GLN 183 has a net charge of 0.2100 !!! WARNING: ILE 184 has a net charge of 0.1990 !!! WARNING: GLU 185 has a net charge of 0.2460 !!! WARNING: CYS 186 has a net charge of 0.1460 !!! WARNING: PRO 188 has a net charge of 0.1120 !!! WARNING: TYR 189 has a net charge of 0.2450 !!! WARNING: LEU 190 has a net charge of 0.2040 !!! WARNING: THR 191 has a net charge of 0.2680 !!! WARNING: GLN 192 has a net charge of 0.2100 !!! WARNING: GLU 193 has a net charge of 0.2460 !!! WARNING: LYS 194 has a net charge of 0.2270 !!! WARNING: LEU 195 has a net charge of 0.2040 !!! WARNING: ILE 196 has a net charge of 0.1990 !!! WARNING: GLN 197 has a net charge of 0.2100 !!! WARNING: TYR 198 has a net charge of 0.2450 !!! WARNING: CYS 199 has a net charge of 0.1460 !!! WARNING: GLN 200 has a net charge of 0.2100 !!! WARNING: SER 201 has a net charge of 0.2920 !!! WARNING: LYS 202 has a net charge of 0.2270 !!! WARNING: GLY 203 has a net charge of 0.2460 !!! WARNING: ILE 204 has a net charge of 0.1990 !!! WARNING: VAL 205 has a net charge of 0.2010 !!! WARNING: VAL 206 has a net charge of 0.2010 !!! WARNING: THR 207 has a net charge of 0.2680 !!! WARNING: ALA 208 has a net charge of 0.2150 !!! WARNING: TYR 209 has a net charge of 0.2450 !!! WARNING: SER 210 has a net charge of 0.2920 !!! WARNING: PRO 211 has a net charge of 0.1120 !!! WARNING: LEU 212 has a net charge of 0.2040 !!! WARNING: GLY 213 has a net charge of 0.2460 !!! WARNING: SER 214 has a net charge of 0.2920 !!! WARNING: PRO 215 has a net charge of 0.1120 !!! WARNING: ASP 216 has a net charge of 0.2460 !!! WARNING: ARG 217 has a net charge of 0.2370 !!! WARNING: PRO 218 has a net charge of 0.1120 !!! WARNING: TRP 219 has a net charge of 0.2480 !!! WARNING: ALA 220 has a net charge of 0.2150 !!! WARNING: LYS 221 has a net charge of 0.2270 !!! WARNING: PRO 222 has a net charge of 0.1120 !!! WARNING: GLU 223 has a net charge of 0.2460 !!! WARNING: ASP 224 has a net charge of 0.2460 !!! WARNING: PRO 225 has a net charge of 0.1120 !!! WARNING: SER 226 has a net charge of 0.2920 !!! WARNING: LEU 227 has a net charge of 0.2040 !!! WARNING: LEU 228 has a net charge of 0.2040 !!! WARNING: GLU 229 has a net charge of 0.2460 !!! WARNING: ASP 230 has a net charge of 0.2460 !!! WARNING: ILE 233 has a net charge of 0.1990 !!! WARNING: THR 243 has a net charge of 0.2680 !!! WARNING: THR 244 has a net charge of 0.2680 !!! WARNING: ALA 245 has a net charge of 0.2150 !!! WARNING: GLN 246 has a net charge of 0.2100 !!! WARNING: VAL 247 has a net charge of 0.2010 !!! WARNING: LEU 248 has a net charge of 0.2040 !!! WARNING: ILE 249 has a net charge of 0.1990 !!! WARNING: ARG 250 has a net charge of 0.2370 !!! WARNING: PHE 251 has a net charge of 0.2140 !!! WARNING: PRO 252 has a net charge of 0.1120 !!! WARNING: MET 253 has a net charge of 0.1370 !!! WARNING: GLN 254 has a net charge of 0.2100 !!! WARNING: ARG 255 has a net charge of 0.2370 !!! WARNING: ASN 256 has a net charge of 0.2170 !!! WARNING: LEU 257 has a net charge of 0.2040 !!! WARNING: VAL 258 has a net charge of 0.2010 !!! WARNING: VAL 259 has a net charge of 0.2010 !!! WARNING: ILE 260 has a net charge of 0.1990 !!! WARNING: PRO 261 has a net charge of 0.1120 !!! WARNING: LYS 262 has a net charge of 0.2270 !!! WARNING: SER 263 has a net charge of 0.2920 !!! WARNING: VAL 264 has a net charge of 0.2010 !!! WARNING: THR 265 has a net charge of 0.2680 !!! WARNING: PRO 266 has a net charge of 0.1120 !!! WARNING: GLU 267 has a net charge of 0.2460 !!! WARNING: ARG 268 has a net charge of 0.2370 !!! WARNING: ILE 269 has a net charge of 0.1990 !!! WARNING: ALA 270 has a net charge of 0.2150 !!! WARNING: GLU 271 has a net charge of 0.2460 !!! WARNING: ASN 272 has a net charge of 0.2170 !!! WARNING: PHE 273 has a net charge of 0.2140 !!! WARNING: LYS 274 has a net charge of 0.2270 !!! WARNING: VAL 275 has a net charge of 0.2010 !!! WARNING: LEU 288 has a net charge of 0.2040 !!! WARNING: LEU 289 has a net charge of 0.2040 !!! WARNING: SER 290 has a net charge of 0.2920 !!! WARNING: TYR 291 has a net charge of 0.2450 !!! WARNING: ASN 292 has a net charge of 0.2170 !!! WARNING: ARG 293 has a net charge of 0.2370 !!! WARNING: ASN 294 has a net charge of 0.2170 !!! WARNING: TRP 295 has a net charge of 0.2480 !!! WARNING: ARG 296 has a net charge of 0.2370 !!! WARNING: VAL 297 has a net charge of 0.2010 !!! WARNING: CYS 298 has a net charge of 0.1460 !!! WARNING: ALA 299 has a net charge of 0.2150 !!! WARNING: LEU 300 has a net charge of 0.2040 !!! WARNING: LEU 301 has a net charge of 0.2040 !!! WARNING: SER 302 has a net charge of 0.2920 !!! WARNING: CYS 303 has a net charge of 0.1460 !!! WARNING: THR 304 has a net charge of 0.2680 !!! WARNING: SER 305 has a net charge of 0.2920 !!! WARNING: LYS 307 has a net charge of 0.2270 !!! WARNING: ASP 308 has a net charge of 0.2460 !!! WARNING: TYR 309 has a net charge of 0.2450 !!! WARNING: PRO 310 has a net charge of 0.1120 !!! WARNING: PHE 311 has a net charge of 0.2140 !!! WARNING: GLU 313 has a net charge of 0.2460 !!! WARNING: GLU 314 has a net charge of 0.2460 !!! WARNING: PHE 315 has a net charge of 0.2140 !!! WARNING: NAP 350 has a net charge of -2.0000 !!! WARNING: SER 2 has a net charge of 0.2920 !!! WARNING: ARG 3 has a net charge of 0.2370 !!! WARNING: LEU 4 has a net charge of 0.2040 !!! WARNING: LEU 5 has a net charge of 0.2040 !!! WARNING: LEU 6 has a net charge of 0.2040 !!! WARNING: ASN 7 has a net charge of 0.2170 !!! WARNING: ASN 8 has a net charge of 0.2170 !!! WARNING: ALA 10 has a net charge of 0.2150 !!! WARNING: LYS 11 has a net charge of 0.2270 !!! WARNING: MET 12 has a net charge of 0.1370 !!! WARNING: PRO 13 has a net charge of 0.1120 !!! WARNING: ILE 14 has a net charge of 0.1990 !!! WARNING: LEU 15 has a net charge of 0.2040 !!! WARNING: GLY 16 has a net charge of 0.2460 !!! WARNING: LEU 17 has a net charge of 0.2040 !!! WARNING: GLY 18 has a net charge of 0.2460 !!! WARNING: THR 19 has a net charge of 0.2680 !!! WARNING: TRP 20 has a net charge of 0.2480 !!! WARNING: LYS 21 has a net charge of 0.2270 !!! WARNING: SER 22 has a net charge of 0.2920 !!! WARNING: PRO 23 has a net charge of 0.1120 !!! WARNING: PRO 24 has a net charge of 0.1120 !!! WARNING: GLY 25 has a net charge of 0.2460 !!! WARNING: GLN 26 has a net charge of 0.2100 !!! WARNING: VAL 27 has a net charge of 0.2010 !!! WARNING: THR 28 has a net charge of 0.2680 !!! WARNING: GLU 29 has a net charge of 0.2460 !!! WARNING: ALA 30 has a net charge of 0.2150 !!! WARNING: VAL 31 has a net charge of 0.2010 !!! WARNING: LYS 32 has a net charge of 0.2270 !!! WARNING: VAL 33 has a net charge of 0.2010 !!! WARNING: ALA 34 has a net charge of 0.2150 !!! WARNING: ILE 35 has a net charge of 0.1990 !!! WARNING: VAL 37 has a net charge of 0.2010 !!! WARNING: GLY 38 has a net charge of 0.2460 !!! WARNING: TYR 39 has a net charge of 0.2450 !!! WARNING: ARG 40 has a net charge of 0.2370 !!! WARNING: ILE 42 has a net charge of 0.1990 !!! WARNING: ASP 43 has a net charge of 0.2460 !!! WARNING: CYS 44 has a net charge of 0.1460 !!! WARNING: ALA 45 has a net charge of 0.2150 !!! WARNING: VAL 47 has a net charge of 0.2010 !!! WARNING: TYR 48 has a net charge of 0.2450 !!! WARNING: GLN 49 has a net charge of 0.2100 !!! WARNING: ASN 50 has a net charge of 0.2170 !!! WARNING: GLU 51 has a net charge of 0.2460 !!! WARNING: ASN 52 has a net charge of 0.2170 !!! WARNING: GLU 53 has a net charge of 0.2460 !!! WARNING: VAL 54 has a net charge of 0.2010 !!! WARNING: GLY 55 has a net charge of 0.2460 !!! WARNING: VAL 56 has a net charge of 0.2010 !!! WARNING: ALA 57 has a net charge of 0.2150 !!! WARNING: ILE 58 has a net charge of 0.1990 !!! WARNING: GLN 59 has a net charge of 0.2100 !!! WARNING: GLU 60 has a net charge of 0.2460 !!! WARNING: ARG 69 has a net charge of 0.2370 !!! WARNING: GLU 70 has a net charge of 0.2460 !!! WARNING: GLU 71 has a net charge of 0.2460 !!! WARNING: LEU 72 has a net charge of 0.2040 !!! WARNING: PHE 73 has a net charge of 0.2140 !!! WARNING: ILE 74 has a net charge of 0.1990 !!! WARNING: VAL 75 has a net charge of 0.2010 !!! WARNING: SER 76 has a net charge of 0.2920 !!! WARNING: LYS 77 has a net charge of 0.2270 !!! WARNING: LEU 78 has a net charge of 0.2040 !!! WARNING: TRP 79 has a net charge of 0.2480 !!! WARNING: CYS 80 has a net charge of 0.1460 !!! WARNING: THR 81 has a net charge of 0.2680 !!! WARNING: TYR 82 has a net charge of 0.2450 !!! WARNING: GLU 84 has a net charge of 0.2460 !!! WARNING: LYS 85 has a net charge of 0.2270 !!! WARNING: GLY 86 has a net charge of 0.2460 !!! WARNING: LEU 87 has a net charge of 0.2040 !!! WARNING: VAL 88 has a net charge of 0.2010 !!! WARNING: LYS 89 has a net charge of 0.2270 !!! WARNING: GLY 90 has a net charge of 0.2460 !!! WARNING: ALA 91 has a net charge of 0.2150 !!! WARNING: CYS 92 has a net charge of 0.1460 !!! WARNING: GLN 93 has a net charge of 0.2100 !!! WARNING: LYS 94 has a net charge of 0.2270 !!! WARNING: THR 95 has a net charge of 0.2680 !!! WARNING: LEU 96 has a net charge of 0.2040 !!! WARNING: SER 97 has a net charge of 0.2920 !!! WARNING: ASP 98 has a net charge of 0.2460 !!! WARNING: LEU 99 has a net charge of 0.2040 !!! WARNING: LYS 100 has a net charge of 0.2270 !!! WARNING: LEU 101 has a net charge of 0.2040 !!! WARNING: ASP 102 has a net charge of 0.2460 !!! WARNING: TYR 103 has a net charge of 0.2450 !!! WARNING: LEU 104 has a net charge of 0.2040 !!! WARNING: ASP 105 has a net charge of 0.2460 !!! WARNING: LEU 106 has a net charge of 0.2040 !!! WARNING: TYR 107 has a net charge of 0.2450 !!! WARNING: LEU 108 has a net charge of 0.2040 !!! WARNING: ILE 109 has a net charge of 0.1990 !!! WARNING: TRP 111 has a net charge of 0.2480 !!! WARNING: PRO 112 has a net charge of 0.1120 !!! WARNING: THR 113 has a net charge of 0.2680 !!! WARNING: GLY 114 has a net charge of 0.2460 !!! WARNING: PHE 115 has a net charge of 0.2140 !!! WARNING: LYS 116 has a net charge of 0.2270 !!! WARNING: PRO 117 has a net charge of 0.1120 !!! WARNING: GLY 118 has a net charge of 0.2460 !!! WARNING: LYS 119 has a net charge of 0.2270 !!! WARNING: GLU 120 has a net charge of 0.2460 !!! WARNING: PHE 121 has a net charge of 0.2140 !!! WARNING: PHE 122 has a net charge of 0.2140 !!! WARNING: PRO 123 has a net charge of 0.1120 !!! WARNING: LEU 124 has a net charge of 0.2040 !!! WARNING: ASP 125 has a net charge of 0.2460 !!! WARNING: GLU 126 has a net charge of 0.2460 !!! WARNING: SER 127 has a net charge of 0.2920 !!! WARNING: GLY 128 has a net charge of 0.2460 !!! WARNING: ASN 129 has a net charge of 0.2170 !!! WARNING: VAL 130 has a net charge of 0.2010 !!! WARNING: VAL 131 has a net charge of 0.2010 !!! WARNING: PRO 132 has a net charge of 0.1120 !!! WARNING: SER 133 has a net charge of 0.2920 !!! WARNING: ASP 134 has a net charge of 0.2460 !!! WARNING: THR 135 has a net charge of 0.2680 !!! WARNING: ASN 136 has a net charge of 0.2170 !!! WARNING: ILE 137 has a net charge of 0.1990 !!! WARNING: LEU 138 has a net charge of 0.2040 !!! WARNING: ASP 139 has a net charge of 0.2460 !!! WARNING: THR 140 has a net charge of 0.2680 !!! WARNING: TRP 141 has a net charge of 0.2480 !!! WARNING: ALA 142 has a net charge of 0.2150 !!! WARNING: ALA 143 has a net charge of 0.2150 !!! WARNING: MET 144 has a net charge of 0.1370 !!! WARNING: GLU 145 has a net charge of 0.2460 !!! WARNING: GLU 146 has a net charge of 0.2460 !!! WARNING: LEU 147 has a net charge of 0.2040 !!! WARNING: VAL 148 has a net charge of 0.2010 !!! WARNING: GLY 151 has a net charge of 0.2460 !!! WARNING: LEU 152 has a net charge of 0.2040 !!! WARNING: VAL 153 has a net charge of 0.2010 !!! WARNING: LYS 154 has a net charge of 0.2270 !!! WARNING: ALA 155 has a net charge of 0.2150 !!! WARNING: ILE 156 has a net charge of 0.1990 !!! WARNING: GLY 157 has a net charge of 0.2460 !!! WARNING: ILE 158 has a net charge of 0.1990 !!! WARNING: SER 159 has a net charge of 0.2920 !!! WARNING: ASN 160 has a net charge of 0.2170 !!! WARNING: PHE 161 has a net charge of 0.2140 !!! WARNING: ASN 162 has a net charge of 0.2170 !!! WARNING: LEU 164 has a net charge of 0.2040 !!! WARNING: GLN 165 has a net charge of 0.2100 !!! WARNING: VAL 166 has a net charge of 0.2010 !!! WARNING: GLU 167 has a net charge of 0.2460 !!! WARNING: MET 168 has a net charge of 0.1370 !!! WARNING: ILE 169 has a net charge of 0.1990 !!! WARNING: LEU 170 has a net charge of 0.2040 !!! WARNING: ASN 171 has a net charge of 0.2170 !!! WARNING: LYS 172 has a net charge of 0.2270 !!! WARNING: PRO 173 has a net charge of 0.1120 !!! WARNING: LEU 175 has a net charge of 0.2040 !!! WARNING: LYS 176 has a net charge of 0.2270 !!! WARNING: TYR 177 has a net charge of 0.2450 !!! WARNING: LYS 178 has a net charge of 0.2270 !!! WARNING: PRO 179 has a net charge of 0.1120 !!! WARNING: ALA 180 has a net charge of 0.2150 !!! WARNING: VAL 181 has a net charge of 0.2010 !!! WARNING: ASN 182 has a net charge of 0.2170 !!! WARNING: GLN 183 has a net charge of 0.2100 !!! WARNING: ILE 184 has a net charge of 0.1990 !!! WARNING: GLU 185 has a net charge of 0.2460 !!! WARNING: CYS 186 has a net charge of 0.1460 !!! WARNING: PRO 188 has a net charge of 0.1120 !!! WARNING: TYR 189 has a net charge of 0.2450 !!! WARNING: LEU 190 has a net charge of 0.2040 !!! WARNING: THR 191 has a net charge of 0.2680 !!! WARNING: GLN 192 has a net charge of 0.2100 !!! WARNING: GLU 193 has a net charge of 0.2460 !!! WARNING: LYS 194 has a net charge of 0.2270 !!! WARNING: LEU 195 has a net charge of 0.2040 !!! WARNING: ILE 196 has a net charge of 0.1990 !!! WARNING: GLN 197 has a net charge of 0.2100 !!! WARNING: TYR 198 has a net charge of 0.2450 !!! WARNING: CYS 199 has a net charge of 0.1460 !!! WARNING: GLN 200 has a net charge of 0.2100 !!! WARNING: SER 201 has a net charge of 0.2920 !!! WARNING: LYS 202 has a net charge of 0.2270 !!! WARNING: GLY 203 has a net charge of 0.2460 !!! WARNING: ILE 204 has a net charge of 0.1990 !!! WARNING: VAL 205 has a net charge of 0.2010 !!! WARNING: VAL 206 has a net charge of 0.2010 !!! WARNING: THR 207 has a net charge of 0.2680 !!! WARNING: ALA 208 has a net charge of 0.2150 !!! WARNING: TYR 209 has a net charge of 0.2450 !!! WARNING: SER 210 has a net charge of 0.2920 !!! WARNING: PRO 211 has a net charge of 0.1120 !!! WARNING: LEU 212 has a net charge of 0.2040 !!! WARNING: GLY 213 has a net charge of 0.2460 !!! WARNING: SER 214 has a net charge of 0.2920 !!! WARNING: PRO 215 has a net charge of 0.1120 !!! WARNING: ASP 216 has a net charge of 0.2460 !!! WARNING: ARG 217 has a net charge of 0.2370 !!! WARNING: PRO 218 has a net charge of 0.1120 !!! WARNING: TRP 219 has a net charge of 0.2480 !!! WARNING: ALA 220 has a net charge of 0.2150 !!! WARNING: LYS 221 has a net charge of 0.2270 !!! WARNING: PRO 222 has a net charge of 0.1120 !!! WARNING: GLU 223 has a net charge of 0.2460 !!! WARNING: ASP 224 has a net charge of 0.2460 !!! WARNING: PRO 225 has a net charge of 0.1120 !!! WARNING: SER 226 has a net charge of 0.2920 !!! WARNING: LEU 227 has a net charge of 0.2040 !!! WARNING: LEU 228 has a net charge of 0.2040 !!! WARNING: GLU 229 has a net charge of 0.2460 !!! WARNING: ASP 230 has a net charge of 0.2460 !!! WARNING: ILE 233 has a net charge of 0.1990 !!! WARNING: THR 243 has a net charge of 0.2680 !!! WARNING: THR 244 has a net charge of 0.2680 !!! WARNING: ALA 245 has a net charge of 0.2150 !!! WARNING: GLN 246 has a net charge of 0.2100 !!! WARNING: VAL 247 has a net charge of 0.2010 !!! WARNING: LEU 248 has a net charge of 0.2040 !!! WARNING: ILE 249 has a net charge of 0.1990 !!! WARNING: ARG 250 has a net charge of 0.2370 !!! WARNING: PHE 251 has a net charge of 0.2140 !!! WARNING: PRO 252 has a net charge of 0.1120 !!! WARNING: MET 253 has a net charge of 0.1370 !!! WARNING: GLN 254 has a net charge of 0.2100 !!! WARNING: ARG 255 has a net charge of 0.2370 !!! WARNING: ASN 256 has a net charge of 0.2170 !!! WARNING: LEU 257 has a net charge of 0.2040 !!! WARNING: VAL 258 has a net charge of 0.2010 !!! WARNING: VAL 259 has a net charge of 0.2010 !!! WARNING: ILE 260 has a net charge of 0.1990 !!! WARNING: PRO 261 has a net charge of 0.1120 !!! WARNING: LYS 262 has a net charge of 0.2270 !!! WARNING: SER 263 has a net charge of 0.2920 !!! WARNING: VAL 264 has a net charge of 0.2010 !!! WARNING: THR 265 has a net charge of 0.2680 !!! WARNING: PRO 266 has a net charge of 0.1120 !!! WARNING: GLU 267 has a net charge of 0.2460 !!! WARNING: ARG 268 has a net charge of 0.2370 !!! WARNING: ILE 269 has a net charge of 0.1990 !!! WARNING: ALA 270 has a net charge of 0.2150 !!! WARNING: GLU 271 has a net charge of 0.2460 !!! WARNING: ASN 272 has a net charge of 0.2170 !!! WARNING: PHE 273 has a net charge of 0.2140 !!! WARNING: LYS 274 has a net charge of 0.2270 !!! WARNING: VAL 275 has a net charge of 0.2010 !!! WARNING: LEU 288 has a net charge of 0.2040 !!! WARNING: LEU 289 has a net charge of 0.2040 !!! WARNING: SER 290 has a net charge of 0.2920 !!! WARNING: TYR 291 has a net charge of 0.2450 !!! WARNING: ASN 292 has a net charge of 0.2170 !!! WARNING: ARG 293 has a net charge of 0.2370 !!! WARNING: ASN 294 has a net charge of 0.2170 !!! WARNING: TRP 295 has a net charge of 0.2480 !!! WARNING: ARG 296 has a net charge of 0.2370 !!! WARNING: VAL 297 has a net charge of 0.2010 !!! WARNING: CYS 298 has a net charge of 0.1460 !!! WARNING: ALA 299 has a net charge of 0.2150 !!! WARNING: LEU 300 has a net charge of 0.2040 !!! WARNING: LEU 301 has a net charge of 0.2040 !!! WARNING: SER 302 has a net charge of 0.2920 !!! WARNING: CYS 303 has a net charge of 0.1460 !!! WARNING: THR 304 has a net charge of 0.2680 !!! WARNING: SER 305 has a net charge of 0.2920 !!! WARNING: LYS 307 has a net charge of 0.2270 !!! WARNING: ASP 308 has a net charge of 0.2460 !!! WARNING: TYR 309 has a net charge of 0.2450 !!! WARNING: PRO 310 has a net charge of 0.1120 !!! WARNING: PHE 311 has a net charge of 0.2140 !!! WARNING: GLU 313 has a net charge of 0.2460 !!! WARNING: GLU 314 has a net charge of 0.2460 !!! WARNING: PHE 315 has a net charge of 0.2140 !!! WARNING: NAP 350 has a net charge of -2.0000 End of MakeDOCK sphere and grid generation. Grid preparation completed normally. PGFIO-F-209/OPEN/unit=2/'OLD' specified for file which does not exist. File name = ../grids/distmap In source file scoreopt_so.f, at line number 625 PGFIO-F-209/OPEN/unit=2/'OLD' specified for file which does not exist. File name = ../grids/distmap In source file scoreopt_so.f, at line number 625 PGFIO-F-209/OPEN/unit=2/'OLD' specified for file which does not exist. File name = ../grids/distmap In source file scoreopt_so.f, at line number 625 going into second inactives test after second inactives finished ssh_askpass: exec(/usr/libexec/openssh/ssh-askpass): No such file or directory ssh_askpass: exec(/usr/libexec/openssh/ssh-askpass): No such file or directory Permission denied, please try again. ssh_askpass: exec(/usr/libexec/openssh/ssh-askpass): No such file or directory Permission denied, please try again. ssh_askpass: exec(/usr/libexec/openssh/ssh-askpass): No such file or directory Permission denied (publickey,gssapi-with-mic,password). FILTER PROGRAM THIS PROGRAM FILTERS ATOMIC COORDINATE FILES BASED ON DISTANCE AND SEQUENCE CRITERIA name of file to filter by - xtal-lig.pdb filter by atom names or numbers in receptor(na/nu)? residue/ligand orientation number increment filter? -100000 Filter for MS run?(Y/N) N Either names or numbers of the atoms to filter by, as they appear in the pdb, with boolean and/or operators if such apply between them. Maximum of one boolean per two filter atoms. name of ligand file- rec.pdb names of ligand atoms to match against receptor filters. Include boolean and/ors between EACH atom specified. LIGAND ATOM 1ISALL internal filtering? Y distance cutoffs for each of the receptor atoms specified- 25.00000 output filename- poc.txt number of allowed ligand contacts in an all-filter? LIGBUM IS- 0 IR IS 40 Number of atoms in ligand - 0 IL IS 326 NR IS- 1 INTERNAL BEGUN INTERNAL COMPLETED 9 NUMLIG IS- 9 TOTAL NUMBER OF ORIENTATIONS WRITEN IS - 1 filtering complete mf7.csh - site preparation complete, preliminary docking queued