usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 16.4677916666667 -7.20570833333333 15.0751666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1015 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 537 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 537 Number of spheres polar: 136, nonpolar: 308, out of current total: 537 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.47425 26.46469 -17.13700 2.77050 5.32000 24.55839 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 186 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 152 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 143 Spheres center of coords (x y z): 18.7423786013986 -9.87033944055945 14.4649506293706 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.70825053935469 Final number of output spheres is: 45 Number of polar spheres: 9 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 24